PROCHECK Operating Manual

5. Customizing the PROCHECK plots

The file contains a number of keywords below which the parameters are entered. The keywords are:-

• Colour all plots?
• Which plots to produce

  Plot parameters:-

  • 1. Ramachandran plot
  • 2. Gly & Pro Ramachandran plots
  • 3. Chi1-Chi2 plots
  • 4. Main-chain parameters
  • 5. Side-chain parameters
  • 6. Residue properties
  • 7. Main-chain bond length distributions
  • 8. Main-chain bond angle distributions
  • 9. RMS distances from planarity
  • 10. Distorted geometry plots

• Listing options
• Colours
• G-factors
• File-handles

Other text can be inserted anywhere in the file and will be ignored provided that it is not in the block of parameters directly associated with one of these keywords.

Throughout the file are various notes to assist you during editing.

PROCHECK Operating Manual