3DAR pipeline selected
Interpreted from image /dls/i04-1/data/2014/nt5073-16/BAZ2BA/BAZ2BA-x839/BAZ2BA-x839_2_0001.cbf:
Template BAZ2BA-x839_2_####.cbf
Directory /dls/i04-1/data/2014/nt5073-16/BAZ2BA/BAZ2BA-x839
Project: nt5073v16
Heavy atom: s
Crystal: xBAZ2BAx8392
ISPyB XML output set to ispyb.xml
Min No. images / sweep set to 3
XParallel set to -1
Blend mode on
Making directory: /dls/i04-1/data/2014/nt5073-16/tmp/BAZ2BA/BAZ2BA-x839/BAZ2BA-x839_2_/xia2-3da-run/1400148120/Harvest
Created CCP4_SCR: /tmp/4140912.1.medium.q/tmpduMeY2
Removing 0 apparently still images
Removing 0 apparently still images
Resetting indexer done as prepare not done
Resetting indexer finish done as index not done
Resetting indexer done as prepare not done
Selected image 1
Selected image 450
Selected image 900
Logfile: labelit.index -> /dls/i04-1/data/2014/nt5073-16/tmp/BAZ2BA/BAZ2BA-x839/BAZ2BA-x839_2_/xia2-3da-run/1400148120/xBAZ2BAx8392/setup/1_labelit.index.log
Indexing from images:
/dls/i04-1/data/2014/nt5073-16/BAZ2BA/BAZ2BA-x839/BAZ2BA-x839_2_0001.cbf
/dls/i04-1/data/2014/nt5073-16/BAZ2BA/BAZ2BA-x839/BAZ2BA-x839_2_0450.cbf
/dls/i04-1/data/2014/nt5073-16/BAZ2BA/BAZ2BA-x839/BAZ2BA-x839_2_0900.cbf
Overriding value for wavelength SAD to 0.920000
Reading 1800 headers took 2s
Exposure epoch for sweep BAZ2BA-x839_2_####.cbf: 1400148153 1400148243
Using XDS Integrater in new resolution mode
Integrater factory: Setting wavelength: 0.920000
Deleting all stored results.
Using LabelitIndex Indexer
Indexer factory: Setting wavelength: 0.920000
Making directory: /dls/i04-1/data/2014/nt5073-16/tmp/BAZ2BA/BAZ2BA-x839/BAZ2BA-x839_2_/xia2-3da-run/1400148120/xBAZ2BAx8392/SAD/SWEEP1/index
Latest header information for image 1:
beam = (143.99324000000001, 124.99928000000001)
date = Thu May 15 11:02:33 2014
detector = dectris
detector_class = pilatus 2M
distance = 189.45
epoch = 1400148153.0
exposure_time = 0.05
phi_end = 30.1
phi_start = 30.0
phi_width = 0.1
pixel = (0.17200000000000001, 0.17200000000000001)
raw_beam = (143.99324000000001, 124.99928000000001)
size = (1679, 1475)
two_theta = 0.0
wavelength = 0.92
Making directory: /dls/i04-1/data/2014/nt5073-16/tmp/BAZ2BA/BAZ2BA-x839/BAZ2BA-x839_2_/xia2-3da-run/1400148120/xBAZ2BAx8392/SAD/SWEEP1/integrate
Sweep epoch: 1400148153
Latest header information for image 1:
beam = (143.99324000000001, 124.99928000000001)
date = Thu May 15 11:02:33 2014
detector = dectris
detector_class = pilatus 2M
distance = 189.45
epoch = 1400148153.0
exposure_time = 0.05
phi_end = 30.1
phi_start = 30.0
phi_width = 0.1
pixel = (0.17200000000000001, 0.17200000000000001)
raw_beam = (143.99324000000001, 124.99928000000001)
size = (1679, 1475)
two_theta = 0.0
wavelength = 0.92
Resetting indexer done as prepare not done
Resetting integrater done as prepare not done
Resetting integrater finish done as integrate not done
Resetting indexer done as prepare not done
Resetting integrater done as prepare not done
Resetting indexer done as prepare not done
Preparing to do some integration...
XDS INTEGRATE PREPARE:
Wavelength: 0.920000
Distance: 189.45
Resetting indexer done as prepare not done
Resetting indexer finish done as index not done
Resetting indexer done as prepare not done
Selected image 1
Selected image 450
Selected image 900
Logfile: labelit.index -> /dls/i04-1/data/2014/nt5073-16/tmp/BAZ2BA/BAZ2BA-x839/BAZ2BA-x839_2_/xia2-3da-run/1400148120/xBAZ2BAx8392/SAD/SWEEP1/index/2_labelit.index.log
Indexing from images:
/dls/i04-1/data/2014/nt5073-16/BAZ2BA/BAZ2BA-x839/BAZ2BA-x839_2_0001.cbf
/dls/i04-1/data/2014/nt5073-16/BAZ2BA/BAZ2BA-x839/BAZ2BA-x839_2_0450.cbf
/dls/i04-1/data/2014/nt5073-16/BAZ2BA/BAZ2BA-x839/BAZ2BA-x839_2_0900.cbf