2DA pipeline selected
Interpreted from image /dls/i04-1/data/2014/nt5073-16/BAZ2BA/BAZ2BA-x828/BAZ2BA-x828_1_0001.cbf:
Template BAZ2BA-x828_1_####.cbf
Directory /dls/i04-1/data/2014/nt5073-16/BAZ2BA/BAZ2BA-x828
Project: nt5073v16
Heavy atom: s
Crystal: xBAZ2BAx8281
ISPyB XML output set to ispyb.xml
Min No. images / sweep set to 3
XParallel set to -1
Blend mode on
Making directory: /dls/i04-1/data/2014/nt5073-16/tmp/BAZ2BA/BAZ2BA-x828/BAZ2BA-x828_1_/xia2-2da-run/1400120766/Harvest
Created CCP4_SCR: /tmp/4137895.1.medium.q/tmp7eI3bJ
Removing 0 apparently still images
Removing 0 apparently still images
Resetting indexer done as prepare not done
Resetting indexer finish done as index not done
Resetting indexer done as prepare not done
Selected image 1
Selected image 450
Selected image 900
Logfile: labelit.index -> /dls/i04-1/data/2014/nt5073-16/tmp/BAZ2BA/BAZ2BA-x828/BAZ2BA-x828_1_/xia2-2da-run/1400120766/xBAZ2BAx8281/setup/1_labelit.index.log
Indexing from images:
/dls/i04-1/data/2014/nt5073-16/BAZ2BA/BAZ2BA-x828/BAZ2BA-x828_1_0001.cbf
/dls/i04-1/data/2014/nt5073-16/BAZ2BA/BAZ2BA-x828/BAZ2BA-x828_1_0450.cbf
/dls/i04-1/data/2014/nt5073-16/BAZ2BA/BAZ2BA-x828/BAZ2BA-x828_1_0900.cbf
Overriding value for wavelength SAD to 0.920000
Reading 1800 headers took 1s
Exposure epoch for sweep BAZ2BA-x828_1_####.cbf: 1400120800 1400120890
Using MosflmR Integrater
Integrater factory: Setting wavelength: 0.920000
Using LabelitIndex Indexer
Indexer factory: Setting wavelength: 0.920000
Making directory: /dls/i04-1/data/2014/nt5073-16/tmp/BAZ2BA/BAZ2BA-x828/BAZ2BA-x828_1_/xia2-2da-run/1400120766/xBAZ2BAx8281/SAD/SWEEP1/index
Latest header information for image 1:
beam = (143.99324000000001, 124.99928000000001)
date = Thu May 15 03:26:40 2014
detector = dectris
detector_class = pilatus 2M
distance = 189.45
epoch = 1400120800.0
exposure_time = 0.05
phi_end = 30.1
phi_start = 30.0
phi_width = 0.1
pixel = (0.17200000000000001, 0.17200000000000001)
raw_beam = (143.99324000000001, 124.99928000000001)
size = (1679, 1475)
two_theta = 0.0
wavelength = 0.92
Making directory: /dls/i04-1/data/2014/nt5073-16/tmp/BAZ2BA/BAZ2BA-x828/BAZ2BA-x828_1_/xia2-2da-run/1400120766/xBAZ2BAx8281/SAD/SWEEP1/integrate
Sweep epoch: 1400120800
Latest header information for image 1:
beam = (143.99324000000001, 124.99928000000001)
date = Thu May 15 03:26:40 2014
detector = dectris
detector_class = pilatus 2M
distance = 189.45
epoch = 1400120800.0
exposure_time = 0.05
phi_end = 30.1
phi_start = 30.0
phi_width = 0.1
pixel = (0.17200000000000001, 0.17200000000000001)
raw_beam = (143.99324000000001, 124.99928000000001)
size = (1679, 1475)
two_theta = 0.0
wavelength = 0.92
Resetting indexer done as prepare not done
Resetting integrater done as prepare not done
Resetting integrater finish done as integrate not done
Resetting indexer done as prepare not done
Resetting integrater done as prepare not done
Resetting indexer done as prepare not done
Preparing to do some integration...
Resetting indexer done as prepare not done
Resetting indexer finish done as index not done
Resetting indexer done as prepare not done
Selected image 1
Selected image 450
Selected image 900
Logfile: labelit.index -> /dls/i04-1/data/2014/nt5073-16/tmp/BAZ2BA/BAZ2BA-x828/BAZ2BA-x828_1_/xia2-2da-run/1400120766/xBAZ2BAx8281/SAD/SWEEP1/index/2_labelit.index.log
Indexing from images:
/dls/i04-1/data/2014/nt5073-16/BAZ2BA/BAZ2BA-x828/BAZ2BA-x828_1_0001.cbf
/dls/i04-1/data/2014/nt5073-16/BAZ2BA/BAZ2BA-x828/BAZ2BA-x828_1_0450.cbf
/dls/i04-1/data/2014/nt5073-16/BAZ2BA/BAZ2BA-x828/BAZ2BA-x828_1_0900.cbf